TAKENAKA,Yoichi - Faculty of Informatics Department of Informatics

TAKENAKA, Yoichi

Faculty, Department/Institute

Faculty of Informatics Department of Informatics

Academic status (qualification)

Professor Apr. 1,2017

Undergraduate Degrees・University

Osaka University Faculty of Engineering Science1995 Advanced a year

Graduate Degrees・University

Osaka University Doctor's Degree Program 1997 Completed
Osaka University Doctor's Degree Program 2000 Completed

Academic Degrees

Mar. 1997 Osaka University
Ph.D in Engineering Mar. 2000 Osaka University

Homepage Address, E-mail Address

Homepage Address：https://www.res.kutc.kansai-u.ac.jp/~takenaka/

Research fields

Research fields	keyword
Genome informatics
Library and information science/Humanistic social informatics

Research topics

research topic
Study theme state
research duration	2001 ～ 2003
Research Programs	Grant-in-Aid for Scientific Research
keyword
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Research Topics Overview

research topic
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research duration	2003 ～ 2006
Research Programs	Grant-in-Aid for Scientific Research
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Research Topics Overview

research topic
Study theme state
research duration	2007 ～ 2010
Research Programs	Grant-in-Aid for Scientific Research
keyword
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Research Topics Overview

research topic
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research duration	2009 ～ 2013
Research Programs	Grant-in-Aid for Scientific Research
keyword
Research field
Research Topics Overview

research topic
Study theme state
research duration	2010 ～ 2013
Research Programs	Grant-in-Aid for Scientific Research
keyword
Research field
Research Topics Overview

research topic
Study theme state
research duration	2010 ～ 2013
Research Programs	Grant-in-Aid for Scientific Research
keyword
Research field
Research Topics Overview

research topic
Study theme state
research duration	2012 ～ 2015
Research Programs	Grant-in-Aid for Scientific Research
keyword
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Research Topics Overview

research topic
Study theme state
research duration	2015 ～ 2018
Research Programs	Grant-in-Aid for Scientific Research
keyword
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Research Topics Overview

research topic
Study theme state
research duration	2016 ～ 2019
Research Programs	Grant-in-Aid for Scientific Research
keyword
Research field
Research Topics Overview

research topic
Study theme state
research duration	2001 ～ 2002
Research Programs
keyword
Research field
Research Topics Overview

Research Career

1995/3/13～1995年/3/17
1997/4/1～2000年/3/31
fellowships from JSPS 1998/4/1～2000年/3/31
Assistant Professor, Grad. Engineering Science, Osaka Univ. 2000/4/1～2002年/3/31
Associate Professor, Grad. Information Science & Technology, Osaka Univ. 2002/4/1～2007年/3/31
Associate Professor, Grad. Information Science & Technology, Osaka Univ. 2007/4/1～2017年/3/31
Center for Twin Research, Graduate School of Medicine (Concurrently) 2014/4/1～2017年/3/31
Guest Professor, Grad. Medicine, Osaka Univ.
Guest Professor, Grad. Information Science & Technology, Osaka Univ. 2017/4/1～2019年/3/31

Awards

Sep. 1996
Sep. 8,2004
Dec. 9,2010
Jan. 19,2012
Aug. 1,2012
Aug. 2,2013
Outstanding Paper Award Jun. 4,2014(Information Processing Society of Japan)

Academic Associations

所属学会・団体名	役職名 (役職在任期間)
	20100400(2014/3/), 20060400(), 20090400(2014/3/), 20150400(), 20050600(), 20090400(2011/3/)

Research Publications

No.	Type of publication	Date of publication (Date of presentation)	Title	Type of research result	Jointly authored or single authored	Publisher and journal name	Volume number
1	Academic presentation7	2022/9/13～2022/9/132022,09,13,2022,09,13	Quantify the Effect of Genetic Factors on DNA Methylation using Identical Twins	Other	Co-author
2	Papers1	2019/10～2019/102019,10,00,2019,10,00	Chromatin 3D reconstruction from chromosomal contacts using a genetic algorithm	Academic Journal	International coauthorship	IEEE/ACM Transactions on Computational Biology and Bioinformatics
3	International academic conference8	2018/11/7～2018/11/72018,11,07,2018,11,07	Nonconvex Discrete Optimization Approach for High Dimensional Regression	Academic Journal	International coauthorship
4	International academic conference8	2018/7/31～2018/7/312018,07,31,2018,07,31	Genotype-based epigenetic factors in identical twins discordant for positive TgAb		Co-author	AACC Annual Meeting & Clinical Lab Expo 2018
5	Papers1	2018/5～2018/52018,05,00,2018,05,00	Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells	Academic Journal	Co-authored	BMC bioinformatics	vol 19(suppl 4):89
6	Papers1	2018/2～2018/22018,02,00,2018,02,00	Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis 'Somei-yoshino'	Academic Journal	Co-authored	Journal of Plant Research	131(4) pp.709-171
7	International academic conference8	2018/1/15～2018/1/172018,01,15,2018,01,17	Functional analysis of metagenome using composition- based method		Co-author	The 16th Asia Pacific Bioinformatics Conference	A18
8	Papers1	2017/12～2017/122017,12,00,2017,12,00	Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer	Academic Journal	International coauthorship	The Journal of the American Medical Association	Vol.318, No.22, pp.2199-2210
9	Papers1	2017/1～2017/12017,01,00,2017,01,00	Genotype-based epigenetic differences in monozygotic twins discordant for positive anti-thyroglobulin autoantibodies	Academic Journal	Co-authored	Thyroid	28(1),110-123
10	International academic conference8	2016/11/1～2016,11,01,,,	Comparative analysis of transformation methods for gene expression profiles in breast cancer datasets	Monograph	Co-author	IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE 2016)	pp.328-333
11	International academic conference8	2016/7～2016,07,00,,,	An accurate estimation method for expression profiles of novel transcripts from RNA-Seq data,		Co-author	International Conference on Intelligent Systems for Molecular Biology (ISMB2016)	No.N24
12	International academic conference8	2016/7～2016,07,00,,,	A method for reducing false positives of target genes of microRNAs by combining two prediction tools		Co-author	International Conference on Intelligent Systems for Molecular Biology (ISMB2016),	No.O49
13	International academic conference8	2016/4～2016,04,00,,,	Bayesian Network Inference from gene expression profiles with a small number of samples		Co-author	The 20th Annual International Conference on Research in Computational Molecular Biology,RECOMB2016	Poster-50
14	International academic conference8	2016/4～2016,04,00,,,	Dynamic Analysis of Gene Regulations using Leaving-One-Out Expression Profile,		Co-author	The 20th Annual International Conference on Research in Computational Molecular Biology, RECOMB2016	Poster-48
15	Papers1	2016/3～2016,03,00,,,	Similarity Measure among Structures of Local Government Statute Books based on Tree Edit Distance	Academic Journal	Co-author	Journal of Open Access to Law	Vol. 4, No.1
16	International academic conference8	2015/11～2015,11,00,,,	Identification of the state-change-time-point of gene regulations from time-course experiments		Single-Author	The second workshop on Advanced Methodologies for Bayesian Networks
17	International academic conference8	2015/10～2015,10,00,,,	Similarity Measure among Structures of Local Government Statute Books Based on Tree Edit Distance	Monograph	Co-author	The 7th international conference on Knowledge and Systems Engineering (KSE 2015)	No. 10, pp. 49-54
18	Papers1	2015/9～2015,09,00,,,	Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution	Academic Journal	Co-author	J. Bioinformatics and Computational Biology	vol. 13 Issue 5
19	International academic conference8	2015/9～2015,09,00,,,	Detecting the shifts of gene regulatory networks during time-course experiments with a single time point temporal resolution	Monograph	Co-author	Proceeding of GIW/InCoB2015	J13
20	International academic conference8	2015/3～2015,03,00,,,	A rendering method based on local maximum intensity projection for in vivo cellular imaging	Monograph	Co-author	Proceedings of Medical and Biological Imaging - JSMBE	JSMBE-MBI2014-2
21	International academic conference8	2014/10～2014,10,00,,,	An automatic event detection method using semi-supervised learning for time-lapse imaging data		Co-author	Bioimage Informatics 2014	P22
22	International academic conference8	2014/10～2014,10,00,,,	Improvement approach of cell tracking accuracy by using inter-frame information		Co-author	Bioimage Informatics 2014	P38
23	Papers1	2014/9～2014,09,00,,,	Metagenome fragment classification based on multiple motif-occurrence profiles	Academic Journal	Co-author	PeerJ	( 2 : e559 )
24	International academic conference8	2014/7～2014,07,00,,,	Chronological analysis of regulatory strength on gene regulatory networks		Co-author	13rd European Conference on Computational Biology ( ECCB2014 )	B04
25	International academic conference8	2013/11～2013,11,00,,,	Integrative prediction of miRNA-mRNA interactions from high-throughput sequencing data		Co-author	RECOMB/ISCB Conference on Regulatory and Systems Genomics, with DREAM Challenges 2013
26	International academic conference8	2013/7～2013,07,00,,,	Reconstruction of Dynamic Gene Regulatory Networks for Cell Differentiation by Separation of Time-course Data		Co-author	The 2013 World Congress in Computer Science Computer Engineering and Applied Computing
27	International academic conference8	2013/7～2013,07,00,,,	A Method of Sequence Analysis for High-Throughput Sequencer Data Based on Shifted Short Read Clustering		Co-author	The 2013 World Congress in Computer Science Computer Engineering and Applied Computing
28	International academic conference8	2013/7～2013,07,00,,,	Gene Set Enrichment Analysis for a Long Time Series Gene Expression Profile		Co-author	The 2013 World Congress in Computer Science Computer Engineering and Applied Computing
29	International academic conference8	2013/7～2013,07,00,,,	Gene Set Enrichment Analysis for Time-Series Gene Expression Profile		Co-author	35th Annual International IEEE EMBS Conference, 2013 IEEE EMBC
30	International academic conference8	2013/7～2013,07,00,,,	Multiplication of Motif Occurrence Profiles for Metagenome Fragment Classification		Co-author	35th Annual International IEEE EMBS Conference, 2013 IEEE EMBC
31	Papers1	2013/4～2013,04,00,,,	An estimation method for a cellular-statespecific gene regulatory network along tree-structured gene expression profiles	Academic Journal	Co-author	Gene	(518), pp.17-25
32	International academic conference8	2012/12～2012,12,00,,,	An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles		Co-author	Proceedings of the 2012 International Conference on Genome Informatics (GIW2012)
33	International academic conference8	2012/12～2012,12,00,,,	Estimate Dynamic Gene Regulatory Networks in Adipocyte Differentiation for Detecting Changes of Gene Regulations by Splitting Time Course Data		Co-author	The 23rd International Conference on Genome Informatics (GIW2012)
34	International academic conference8	2012/10～2012,10,00,,,	Transcript-Type Dependent Normalization of Expression Levels in RNA-Seq Data for Non-Coding RNA Analysis		Co-author	Joint Conference on Informatics is Biology, Medicine and Pharmacology
35	International academic conference8	2012/10～2012,10,00,,,	Comparison of Gene Expressions measured by RNA-seq and Microarray for Transcriptome Analysis of Adipose Tissues		Co-author	Joint Conference on Informatics is Biology, Medicine and Pharmacology
36	International academic conference8	2012/10～2012,10,00,,,	Two-stage method to infer gene regulatory network utilizing Link Prediction		Co-author	Joint Conference on Informatics is Biology, Medicine and Pharmacology
37	International academic conference8	2012/10～2012,10,00,,,	Estimation of Dynamic Gene Regulatory Networks for Cell Differentiation by Splitting Time Course Data		Co-author	Joint Conference on Informatics in Biology, Medicine and Pharmacology
38	International academic conference8	2012/10～2012,10,00,,,	Bayes-based inference of gene regulatory network for multiple time series gene expression profile		Co-author	Joint Conference on Informatics in Biology, Medicine and Pharmacology
39	International academic conference8	2012/10～2012,10,00,,,	Automatic cell tracking for time-lapse fluorescent images of cell cycle		Co-author	Towards Comprehensive Understanding of Immune Dynamism (TCUID 2012)
40	International academic conference8	2012/7～2012,07,00,,,	All the 1+3n one-mismatch sequences of n-mer DNA are involved in 22.2+0.00879n strings of Perfect Linear Code words on DNA		Co-author	International Conference on Intelligent Systems for Molecular Biology (ISMB2012)	U44
41	Papers1	2012/4～2012,04,00,,,	A method for isoform prediction from RNA-Seq data by iterative mapping	Academic Journal	Co-author	IPSJ Transactions on Bioinformatics	( 5 ), pp.27-33
42	Papers1	2012/1～2012,01,00,,,	An Estimation Method for Inference of Gene Regulatory Network Using Bayesian Network with Uniting of Partial Problems	Academic Journal	Co-author	BMC Genomics	(13 - suppl. 1)
43	International academic conference8	2012/1～2012,01,00,,,	An Estimation Method for Inference of Gene Regulatory Network Using Bayesian Network with Uniting of Partial Problems	Monograph	Co-author	The tenth Asia Pacific Bioinformatics Conference (APBC2012)	A3.1
44	Papers1	2011/12～2011,12,00,,,	Inference of S-system Models of Gene Regulatory Networks using Immune Algorithm	Academic Journal	Co-author	Journal of Bioinformatics and Computational Biology	( 9 - suppl. 1)
45	International academic conference8	2011/12～2011,12,00,,,	Inference of S-system Models of Gene Regulatory Networks using Immune Algorithm		Co-author	Proceedings of the 2011 International Conference on Genome Informatics (GIW2011)
46	International academic conference8	2011/12～2011,12,00,,,	A random forest approach to the detection of a rare disease in the case control studies		Co-author	The 22nd International Conference on Genome Informatics (GIW 2011)
47	Papers1	2011/11～2011,11,00,,,	Perfect Hamming code with a hash table for faster genome mapping	Academic Journal	Co-author	BMC Genomics	(12 - suppl. 3), S3
48	International academic conference8	2011/11～2011,11,00,,,	Mutation-aware clustering with error correction for short-read genome mapping	Monograph	Co-author	The 2011 Joint Conference of CBI&JSBi	JSBi-27
49	International academic conference8	2011/11～2011,11,00,,,	Perfect Hamming code with a hash table for faster genome mapping	Monograph	Co-author	Asia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011	3.2
50	International academic conference8	2011/11～2011,11,00,,,	Network analysis for time-series expression profile using nested effects models		Co-author	The 2011 Joint Conference of CBI & JSBi,	JSBi-49
51	International academic conference8	2011/11～2011,11,00,,,	Sequence determination and expression estimation of alleles from RNA-Seq data		Co-author	Asia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011	No.138
52	International academic conference8	2011/11～2011,11,00,,,	Detect unique gene regulatory networks along dendrogram of cell differentiation		Co-author	Asia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011	No. 156
53	International academic conference8	2011/11～2011,11,00,,,	Perfect Hamming code with Burrow-Wheeler translation for genome mapping		Co-author	Asia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011	No. 134
54	International academic conference8	2011/7～2011,07,00,,,	A Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial Problems		Co-author	Proceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)	N13
55	International academic conference8	2011/7～2011,07,00,,,	A Directed Graphical Gaussian Model for Inferring Gene Regulatory Networks		Co-author	Proceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011),	X16
56	International academic conference8	2011/7～2011,07,00,,,	Perfect Hamming Code as Hash key for Fast Genome Mapping		Co-author	Proceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)	U22
57	International academic conference8	2011/7～2011,07,00,,,	Feature selection for specifying experimental conditions that activate gene transcriptions		Co-author	Proceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)	M13
58	International academic conference8	2011/7～2011,07,00,,,	A method for risk prediction of a serious disease using rule-based analysis		Co-author	Proceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)	N13
59	International academic conference8	2010/12～2010,12,00,,,	An Improved RNA-Seq Analysis Method for Isoform Prediction by Iterative Mapping	Monograph	Co-author	Proceedings of the 2010 International Conference on Genome Informatics (GIW2010)	No.8
60	International academic conference8	2010/12～2010,12,00,,,	Revealing regulatory relationships of crosstalk with multiple time-series gene expression profiles		Co-author	Proc. the 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)	P017
61	International academic conference8	2010/12～2010,12,00,,,	A bootstrapping method of S-system model for estimating timeline gene regulatory networks		Co-author	Proc. the 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)	P027
62	International academic conference8	2010/9～2010,09,00,,,	A Metadata Management System for Composing Bioinformatics Workflows	Monograph	Co-author	Proceedings of the 9th International Conference on Bioinformatics (InCoB2010)	No.187
63	International academic conference8	2010/7～2010,07,00,,,	An algorithm for fast exact search of chemical compounds by clustered data beforehand		Co-author	Proceedings of the 21st International Workshop on Combinatorial Algorithms
64	International academic conference8	2010/7～2010,07,00,,,	A method for predicting compound-protein interactions using canonical correlational analysis		Co-author	Proc. 18th Annual International Conference on Intelligent Sysmtes for Molecular Biology,	M015
65	International academic conference8	2010/7～2010,07,00,,,	A method for detecting structural variants from massive paired end genome sequences by mapping signatures		Co-author	Proc. 18th Annual International Conference on Intelligent Sysmtes for Molecular Biology,	U041
66	International academic conference8	2010/7～2010,07,00,,,	An estimation method of S-system model of gene regulatory networks using immune algorithm		Co-author	Proc. 18th Annual International Conference on Intelligent Sysmtes for Molecular Biology	X060
67	Papers1	2010/4～2010,04,00,,,	Gene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancer	Academic Journal	Co-author	Annals of Surgical Oncology	( 17 - 4 ), pp.1033-1042
68	Papers1	2010/3～2010,03,00,,,	Improved prediction method for protein interactions using both structural and functional characteristics of proteins	Academic Journal	Co-author	IPSJ Transactions on Bioinformatics	( 3 ), pp.10-23
69	International academic conference8	2009/12～2009,12,00,,,	A Method for Efficient Execution of Bioinformatics Workflows	Monograph	Co-author	Genome Informatics (GIW2009)	vol.23, pp.139-148
70	International academic conference8	2009/12～2009,12,00,,,	A Method of Estimation of Crosstalk Genes with Multiple Time-Series Gene Expression Profiles		Co-author	Proceedings of the 20th International Conference on Genome Informatics (GIW2009)	P057
71	International academic conference8	2009/12～2009,12,00,,,	A Method for Extraction of the Active Compound Groups which Have Strong Relationship between Structure and Activity		Co-author	Proceedings of the 20th International Conference on Genome Informatics (GIW2009)	P133
72	International academic conference8	2009/6～2009,06,00,,,	A Method for Inference of Gene Regulatory Networks based on Bayesian Network with Clustering of Time-Series Subsequences		Co-author	Proceedings of 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB2009)	X67
73	International academic conference8	2009/6～2009,06,00,,,	A Method for Analyzing Gene Expression Profiles based on the Underlying Structures		Co-author	Proceedings of 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB2009)	M21
74	Papers1	2009/4～2009,04,00,,,	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line	Academic Journal	Co-author	Nature Genetics	( 41- 5 ), pp.553-562
75	International academic conference8	2008/12～2008,12,00,,,	A Method for Making a New Reference Set of PDB Entries for Retrieving Protein 3D Structures with Structural Annotations	Monograph	Co-author	Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics	P074/T02
76	International academic conference8	2008/12～2008,12,00,,,	A Method for Reducing Bounds of Compound Search by Dividing Structure Key	Monograph	Co-author	Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics	P077/T01
77	International academic conference8	2008/12～2008,12,00,,,	Architecture of an Efficient Data Transfer System and Manager for Genome-wide Analysis Workflows		Co-author	The 3rd MEI International Symposium
78	International academic conference8	2008/12～2008,12,00,,,	A Method for Analysis of Tissue-Specific Transcriptional Control Using Distributions of Transcription Starting Sites		Co-author	Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics	P044
79	International academic conference8	2008/12～2008,12,00,,,	The Validity Evaluation of Gene Regulatory Network Motifs Based on Differential Equation Model		Co-author	Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics	P045
80	International academic conference8	2008/12～2008,12,00,,,	An Efficient Data Transfer on Workflows for Genome-wide Analysis		Co-author	Proceedings of the 2008 Annual Conference of the Japanese Society for Bioinformatics	P075
81	International academic conference8	2008/7～2008,07,00,,,	Tissue specificity measured by differences in information content between target tissue and whole tissue		Co-author	Proceedings of International Society for Computational Bilogy 2008	A21
82	International academic conference8	2008/7～2008,07,00,,,	A Clustering Method for Expression Patterns of Transcription Starting Sites		Co-author	Proceedings of International Society for Computational Bilogy 2008	J29
83	International academic conference8	2008/7～2008,07,00,,,	A Data Transmission Method for Web Services in Bioinformatics Workflows		Co-author	Proceedings of International Society for Computational Biology 2008	E36
84	International academic conference8	2008/7～2008,07,00,,,	A method for analysis of tissue-specific alternative transcripts using CAGE tags		Co-author	Proceedings of International Society for Computational Bilogy 2008	J30
85	Papers1	2008/3～2008,03,00,,,	A Distributed-Processing System for Accelerating Biological Research using Data-Staging	Academic Journal	Co-author	IPSJ Transactions on Bioinformatics	( 49 ), pp.58-64
86	Papers1	2008/3～2008,03,00,,,	A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction	Academic Journal	Co-author	IPSJ Transactions on Bioinformatics	( 49 ), pp.46-57
87	International academic conference8	2007/12～2007,12,00,,,	GO based Tissue Specific Functions of Mouse using Countable Gene Expression Profiles	Academic Journal	Co-author	Genome Informatics	Vol 19, pp.154-165
88	International academic conference8	2007/12～2007,12,00,,,	A Method for Retrieving Functionally Similar Bioinformatics Workflows		Co-author	Proceedings of 2007 Annual Conference of Japanese Society for Bioinformatics	P011
89	Papers1	2007/10～2007,10,00,,,	Tissue-Specific Functions based on Information Content of Gene Ontology using Cap Analysis Gene Expression	Academic Journal	Co-author	Medical and Biological Engineering and Computing	( 45 ), pp.1029-1036
90	Papers1	2007/3～2007,03,00,,,	Retrieving Functionally Similar Bioinformatics Workflows using TF-IDF Filtering	Academic Journal	Co-author	IPSJ Transactions on Bioinformatics	( 48 ), pp.20-29
91	International academic conference8	2006/8～2006,08,00,,,	Inference of Transcriptional Regulatory Networks using CAGE Transcriptome Dataset of Mus musculus		Co-author	Proceedings of World Congress on Medical Physics and Biomedical Engineering
92	International academic conference8	2006/8～2006,08,00,,,	A Method for Exploring Tissue-Specific Functions based on Information Content of Gene Ontology Terms using CAGE Tags		Co-author	Proceedings of World Congress on Medical Physics and Biomedical Engineering
93	International academic conference8	2006/7～2006,07,00,,,	Extraction of Functionally Similar Bioinformatics Workflows		Co-author	Proceedings of Workshop on Distibuted Applications, Web Services,Tools and GRID Infrastructures for Bioinformatics (NETTAB 2006)
94	Papers1	2006/4～2006,04,00,,,	A method for similarity search of genomic positional expression using CAGE	Academic Journal	Co-author	PLoS Genetics	( 2 - 4 ), pp. 578-586
95	Papers1	2006/4～2006,04,00,,,	Transcript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAs	Academic Journal	Co-author	PLoS Genetics	( 2 - 4 ), pp.498-503
96	Papers1	2005/9～2005,09,00,,,	The transcriptional landscape of the mammalian genome	Academic Journal	Co-author	Science	( 309 - 5740 ), pp.1559-1563
97	International academic conference8	2005/5～2005,05,00,,,	A Framework for Biological Analysis on the Grid		Co-author	Proceedings of Lifescience Grid Workshop
98	International academic conference8	2004/12～2004,12,00,,,	A Method for Clustering Expression Data Based on Graph Structure	Academic Journal	Co-author	Genome Informatics	Vol.15, No.2, pp.151-160
99	Papers1	2004/9～2004,09,00,,,	遺伝子の機能分類を利用した遺伝子制御ネットワーク推定手法	Academic Journal	Co-author
100	International academic conference8	2004/8～2004,08,00,,,	Inference of gene regulatory network based on module network model with gene functional classifications	Monograph	Co-author	Proc. 3rd IEEE Computer Society Bioinformatics Conference(CSB2004)	pp.632-633
101	International academic conference8	2004/8～2004,08,00,,,	A Graph Analysis Method to Detect Metabolic Sub-networks Based on Phylogenetic Profile	Monograph	Co-author	Proc. 3rd IEEE Computer Society Bioinformatics Conference(CSB2004)	pp.634-635
102	Papers1	2004/1～2004,01,00,,,	Graph-based clustering for finding distant relationships in a large set of protein sequences	Academic Journal	Co-author	Bioinformatics	( 20- 2 ), pp.243-252
103	International academic conference8	2003/12～2003,12,00,,,	Mapping of Artificial Nucleosome Positioning Sequences to the Saccharomyces cerevisiae Genome		Co-author	Genome Informatics	No.14, pp.462-463
104	International academic conference8	2003/10～2003,10,00,,,	A network analysis method by comparing microbial metabolic pathways		Co-author	Escherichia coli Conference Towards New Biology in the 21st Century
105	International academic conference8	2003/7～2003,07,00,,,	P-Quasi Complete Linkage Clustering Method for Gene-Expression Profiles based on Distribution Analysis		Co-author	11th International Conference on Intelligent Systems for Molecular Biology	B-59
106	International academic conference8	2003/7～2003,07,00,,,	Frequency enumeration of DNA subsequences from large-scale sequences using linear cod		Co-author	11th International Conference on Intelligent Systems for Molecular Biology	I-19
107	Papers1	2003/6～2003,06,00,,,	Analysis of gene expression profiles based on clustering	Academic Journal	Co-author	Genome Research	( 13 - 6b ), p.1558
108	International academic conference8	2003/3～2003,03,00,,,	A clustering method for comparative analysis between Genomes and Pathways	Monograph	Co-author	8th International Conference on Database Systems for Advanced Applications (DASFAA 2003)	pp. 327-334
109	Papers1	2003/1～2003,01,00,,,	Shortening the Computational time of the fluorescent DNA computing	Academic Journal	Co-author	Lecture Note in Computer Science	( 2568 ), pp.85-94
110	Papers1	2002/12～2002,12,00,,,	Analysis of the mouse transcriptome based upon functional annotation of 60,770 full length cDNAs	Academic Journal	Co-author	Nature	( 420 ) pp. 563-73
111	Papers1	2002/9～2002,09,00,,,	A proposal of DNA computing on beads with application to SAT problems	Academic Journal	Co-author	Lecture Note in Computer Science	( 2340 ), pp.182-190
112	International academic conference8	2002/6～2002,06,00,,,	Shortening the computational time of the fluorescent DNA computing	Monograph	Co-author	Eighth International Meeting on DNA computers (DNA8)	pp. 51-60
113	International academic conference8	2002/5～2002,05,00,,,	An analog algorithm for satisfiability problem	Monograph	Co-author	Fifth International Symposium on Theory and Applications of Satisfiability Testing (SAT2002)	pp. 70-77
114	International academic conference8	2002/5～2002,05,00,,,	DNA computing by competitive hybridization for maximum satisfiability problem	Monograph	Co-author	The 2002 IEEE world congress on computational intelligence, Congress on Evolutionary　Computation (CEC2002)	pp. 472-476
115	International academic conference8	2002/4～2002,04,00,,,	Analysis of gene expression profiles based on clustering		Co-author	Functional annotation of mouse 2 (FANTOM2) Cherry Blossom meeting
116	Papers1	2001/9～2001,09,00,,,	Relaxation of coefficient sensitiveness to performance for neural networks using neuron filter through total coloring problems	Academic Journal	Co-author	IEICE Transactions of Fundamentals	( E84-A・No.9 ), pp.2367-2370
117	International academic conference8	2001/6～2001,06,00,,,	A proposal of DNA computing on beads and its application to SAT problems	Monograph	Co-author	Seventh International Meeting on DNA computers (DNA7)	pp. 331-339
118	Papers1	2000/9～2000,09,00,,,	A proposal of neuron filter: a constraint resolution scheme of neural networks for combinatorial optimization problems	Academic Journal	Co-author	IEICE Transactions of Fundamentals	(E83-A・9 ), pp.1815-1823
119	International academic conference8	2000/7～2000,07,00,,,	A proposal of neuron filter algorithm with a thinning-out method for total coloring problems	Monograph	Co-author	Proc. 4th world multi conference of Systemics, Cybernetics and Informatics (SCI2000)	pp. 563-568
120	International academic conference8	1999/7～1999,07,00,,,	A non-feedback neuron filter algorithm for separated board-level routing problems in FPGA-based logic emulation systems	Monograph	Co-author	Proceedings of IEEE International Joint Conference on Neural Networks (IJCNN'99)	Jcnn0550.pdf
121	International academic conference8	1999/7～1999,07,00,,,	A gradual neural network approach for broadcast scheduling in packet radio networks	Monograph	Co-author	Proceedings of IEEE International Joint Conference on Neural Networks (IJCNN'99)	Jcnn0551.pdf
122	International academic conference8	1998/10～1998,10,00,,,	An improved genetic algorithm using the Convex Hull for traveling salesman problem	Monograph	Co-author	Proceedings of IEEE International Conference on Systems, Man, and Cybernetics (SMC'98)	pp. 2279-2284
123	Papers1	1997/6～1997,06,00,,,	A maximum neural network approach for N-Queen problems.	Academic Journal	Co-author	Biological Cybernetics	(76), pp. 251-255
124	International academic conference8	1997/6～1997,06,00,,,	A proposal of neuron mask in neural network algorithm for combinatorial optimization problems	Monograph	Co-author	Proceedings of IEEE International Conference on Neural Networks (ICNN'97)	Vol.2, pp. 1289-1294
125	International academic conference8	,,,,,	A Method for the Inference of Gene Regulatory Networks based on Dynamic Bayesian Network with Clustering of Time-Series Subsequences		Co-author	Proceedings of the 20th International Conference on Genome Informatics (GIW2009)	P080

Academic presentationQuantify the Effect of Genetic Factors on DNA Methylation using Identical TwinsIn refereedOtherCo-author;2022/9/13～2022/9/13

International academic conferenceIn refereedOtherCo-author;;2021/11/14～2021/11/15

International academic conferenceIn refereedAcademic JournalCo-author;;2021/7/7～2021/7/9

LectureOtherCo-authorTAKENAKA,Yoichi;SANO, Tomoya2020/11/26～2020/11/26

Academic presentationUnrefereedOtherCo-authoredTAKENAKA,Yoichi;HORI, Tetsuya;SEKIYA, Yuki2020/11/26～2020/11/26

Academic presentationUnrefereedAcademic JournalCo-authorTAKENAKA,Yoichi;HORI, Tomoya;SEKIYA, Yuki2020/9/1～2020/9/1

LectureUnrefereedTAKENAKA,Yoichi2020/8/22～2020/8/22

Academic presentationUnrefereedAcademic JournalSingle-AuthorTAKENAKA,Yoichi2020/3/18～2020/3/18

Academic presentationUnrefereedAcademic JournalCo-authorTAKENAKA,Yoichi;NATORI, Ryota;OSUMI, Kyohei地方議会議事録にもとづく議会発言特徴の抽出2020/3/17～2020/3/17

Academic presentationUnrefereedOtherCo-authorTAKENAKA,Yoichi;KOYAMA, Kaito;SANO, Tomoya2020/3/17～2020/3/17

Academic presentationUnrefereedOtherCo-authorTAKENAKA,Yoichi;HORI, Tomoya2019/11/20～2019/11/20The 22nd Information-Based Induction Science Workshop

PapersChromatin 3D reconstruction from chromosomal contacts using a genetic algorithmIn refereedAcademic JournalInternational coauthorshipViacheslav Kapilevich;Shigeto Seno;Hideo Matsuda;Yoichi TakenakaIEEE/ACM Transactions on Computational Biology and Bioinformatics2019/10～2019/10DOI: 10.1109/TCBB.2018.2814995

Academic presentation;2019/6/5～2019/6/5

Academic presentationUnrefereed;;;2019/3/15～2019/3/15

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International academic conferenceUnrefereedSingle-AuthorTAKENAKA,Yoichi2019/1/5～2019/1/5

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International academic conferenceUnrefereedAcademic JournalInternational coauthorshipNAKAGAWA Yuji;HANADA Yoshiko;TAKENAKA,Youichi;Edirisinghe Chanaka2018/11/7～2018/11/7

International academic conferenceNonconvex Discrete Optimization Approach for High Dimensional RegressionUnrefereedAcademic JournalInternational coauthorshipNakagawa Y.;Hanada Y;Takenaka, Y.;Edirishinghe C.2018/11/7～2018/11/7

International academic conferenceGenotype-based epigenetic factors in identical twins discordant for positive TgAbUnrefereedCo-authorMikio Watanabe;Yoichi Takenaka;Chika Honda;Osaka Twin Research Group;Yoshinori IwataniAACC Annual Meeting & Clinical Lab Expo 20182018/7/31～2018/7/31

Academic presentation;Y. TAKENAKA;;;2018/5/24～2018/5/24

PapersAutomated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cellsIn refereedAcademic JournalCo-authoredTAKENAKA,Yoichi;Kazuma Mikami;Shigeto Seno;Hideo Matsuda;BMC bioinformaticsvol 19(suppl 4):892018/5～2018/510.1186/s12859-018-2072-y

PapersCollaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis 'Somei-yoshino'In refereedAcademic JournalCo-authoredTazro Ohta;et. al.;Yoichi Takenaka (16th in 23)Journal of Plant Research131(4) pp.709-1712018/2～2018/210.1007/s10265-018-1017-x

Academic presentation;;;;;2018/1/27～2018/1/27

International academic conferenceFunctional analysis of metagenome using composition- based methodUnrefereedCo-authorMeya Cho;Shigeto Seno;Hideo Matsuda;Yoichi takenakaThe 16th Asia Pacific Bioinformatics ConferenceA182018/1/15～2018/1/17

PapersDiagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancerIn refereedAcademic JournalInternational coauthorshipBabak Ehteshami Bejnordi;et. al.;Yoichi Takenaka (50th author among 61)The Journal of the American Medical AssociationVol.318, No.22, pp.2199-22102017/12～2017/1210.1001/jama.2017.14585

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Academic presentation;;;;TAKENAKA,Yoichi;2017/8～2017/8

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Academic presentationUnrefereed;;Takenaka, Y.;2017/5/23～2017/5/24

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PapersGenotype-based epigenetic differences in monozygotic twins discordant for positive anti-thyroglobulin autoantibodiesIn refereedAcademic JournalCo-authoredMikio Watanabe;Yoichi Takenaka;Chika Honda;Yoshinori IwataniThyroid28(1),110-1232017/1～2017/1

International academic conferenceComparative analysis of transformation methods for gene expression profiles in breast cancer datasetsIn refereedMonographCo-authorYoshiaki Sota;Shigeto Seno;Yoichi Takenaka;Shinzaburo Noguchi;Hideo MatsudaIEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE 2016)pp.328-3332016/11/1～Splendor Hotel, Taichung, Taiwan10.1109/BIBE.2016.51

International academic conferenceAn accurate estimation method for expression profiles of novel transcripts from RNA-Seq data,UnrefereedCo-authorFuki Iwasaki;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaInternational Conference on Intelligent Systems for Molecular Biology (ISMB2016)No.N242016/7～Swan and Dolphin Hotel, Orlando, Florida, USA

International academic conferenceA method for reducing false positives of target genes of microRNAs by combining two prediction toolsUnrefereedCo-authorHideo Matsuda;Junko Tsuda;Shigeto Seno;Yoichi TakenakaInternational Conference on Intelligent Systems for Molecular Biology (ISMB2016),No.O492016/7～Swan and Dolphin Hotel, Orlando, Florida, USA

Academic presentationMonographCo-author2016/6～

International academic conferenceBayesian Network Inference from gene expression profiles with a small number of samplesUnrefereedCo-authorKazumasa Saito;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 20th Annual International Conference on Research in Computational Molecular Biology,RECOMB2016Poster-502016/4～

International academic conferenceDynamic Analysis of Gene Regulations using Leaving-One-Out Expression Profile,UnrefereedCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaThe 20th Annual International Conference on Research in Computational Molecular Biology, RECOMB2016Poster-482016/4～

PapersSimilarity Measure among Structures of Local Government Statute Books based on Tree Edit DistanceIn refereedAcademic JournalCo-authorYoichi Takenaka;Takeshi WakaoJournal of Open Access to LawVol. 4, No.12016/3～10.1109/KSE.2015.57

Academic presentationCo-author2016/3～

Academic presentationMonographCo-author2016/3～

International academic conferenceIdentification of the state-change-time-point of gene regulations from time-course experimentsUnrefereedSingle-AuthorYoichi TakenakaThe second workshop on Advanced Methodologies for Bayesian Networks2015/11～

International academic conferenceSimilarity Measure among Structures of Local Government Statute Books Based on Tree Edit DistanceIn refereedMonographCo-authorYoichi Takenaka;Takeshi WakaoThe 7th international conference on Knowledge and Systems Engineering (KSE 2015)No. 10, pp. 49-542015/10～

PapersDetecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolutionIn refereedAcademic JournalCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaJ. Bioinformatics and Computational Biologyvol. 13 Issue 52015/9～10.1142/S0219720015430027

International academic conferenceDetecting the shifts of gene regulatory networks during time-course experiments with a single time point temporal resolutionIn refereedMonographCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaProceeding of GIW/InCoB2015J132015/9～

Academic presentationCo-author2015/7～

Academic presentationSingle-Author2015/7～

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PapersIn refereedAcademic JournalCo-author2015/3～

International academic conferenceA rendering method based on local maximum intensity projection for in vivo cellular imagingIn refereedMonographCo-authorRyo Taguchi;Shigeto Seno;Junichi Kikuta;Yoichi Takenaka;Masaru Ishii;Hideo MatsudaProceedings of Medical and Biological Imaging - JSMBEJSMBE-MBI2014-22015/3～

Academic presentationMonographCo-author2015/3～

Academic presentationMonographCo-author2014/11～

International academic conferenceAn automatic event detection method using semi-supervised learning for time-lapse imaging dataUnrefereedCo-authorKojiro Fukuda;Shigeto Seno;Tomohiro Mashita;Yoichi Takenaka;Masaru Ishii;Hideo MatsudaBioimage Informatics 2014P222014/10～

International academic conferenceImprovement approach of cell tracking accuracy by using inter-frame informationUnrefereedCo-authorK. Kurashige;S. Seno;T. Mashita;J. Kikuta;Y. Takenaka;M. Ishii;H. MatsudaBioimage Informatics 2014P382014/10～

PapersMetagenome fragment classification based on multiple motif-occurrence profilesIn refereedAcademic JournalCo-authorNaoki Matsushita;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaPeerJ( 2 : e559 )2014/9～10.7717/peerj.559

Academic presentationCo-author2014/9～

Academic presentationMonographCo-author2014/9～

International academic conferenceChronological analysis of regulatory strength on gene regulatory networksUnrefereedCo-authorYoichi Takenaka;Shigeto Seno;Hideo Matsuda13rd European Conference on Computational Biology ( ECCB2014 )B042014/7～

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PapersIn refereedAcademic JournalCo-author2013/12～

Academic presentationMonographCo-author2013/12～

International academic conferenceIntegrative prediction of miRNA-mRNA interactions from high-throughput sequencing dataUnrefereedCo-authorTomoshige Ohno;Shigeto Seno;Hiromi Daiyasu;Yoichi Takenaka;Hideo MatsudaRECOMB/ISCB Conference on Regulatory and Systems Genomics, with DREAM Challenges 20132013/11～

Academic presentationMonographCo-authorTomoyoshi Nakayama;Hiromi Daiyasu;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda2013/10～

Academic presentationMonographCo-author2013/9～

Academic presentationMonographCo-author2013/8～

International academic conferenceReconstruction of Dynamic Gene Regulatory Networks for Cell Differentiation by Separation of Time-course DataIn refereedCo-authorTomoyoshi Nakayama;Hiromi Daiyasu;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 2013 World Congress in Computer Science Computer Engineering and Applied Computing2013/7～

International academic conferenceA Method of Sequence Analysis for High-Throughput Sequencer Data Based on Shifted Short Read ClusteringIn refereedCo-authorKensuke Suzuki;Daisuke Ueta;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 2013 World Congress in Computer Science Computer Engineering and Applied Computing2013/7～

International academic conferenceGene Set Enrichment Analysis for a Long Time Series Gene Expression ProfileIn refereedCo-authorYuta Okuma;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 2013 World Congress in Computer Science Computer Engineering and Applied Computing2013/7～

International academic conferenceGene Set Enrichment Analysis for Time-Series Gene Expression ProfileUnrefereedCo-authorYuta Okuma;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda35th Annual International IEEE EMBS Conference, 2013 IEEE EMBC2013/7～Short Papers, 3225

International academic conferenceMultiplication of Motif Occurrence Profiles for Metagenome Fragment ClassificationUnrefereedCo-authorNaoki Matsushita;Hiromi Daiyasu;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda35th Annual International IEEE EMBS Conference, 2013 IEEE EMBC2013/7～Short Papers, 3055

Academic presentationMonographCo-author2013/7～

PapersAn estimation method for a cellular-statespecific gene regulatory network along tree-structured gene expression profilesIn refereedAcademic JournalCo-authorRyo Araki;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaGene(518), pp.17-25 2013/4～

Academic presentationMonographCo-author2013/3～

Academic presentationMonographCo-author2013/2～

International academic conferenceAn estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profilesIn refereedCo-authorRyo Araki;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 2012 International Conference on Genome Informatics (GIW2012)2012/12～

International academic conferenceEstimate Dynamic Gene Regulatory Networks in Adipocyte Differentiation for Detecting Changes of Gene Regulations by Splitting Time Course DataUnrefereedCo-authorTomoyoshi Nakayama;Yoshiyuki Kido;Hiromi Daiyasu;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 23rd International Conference on Genome Informatics (GIW2012) 2012/12～

Academic presentationCo-author2012/12～

Academic presentationCo-authorShigeto Seno;Sakae Maeda;Yoichi Takenaka;Masaru Ishii;Hideo Matsuda2012/12～

Academic presentationCo-authorTomoshige Ohno;Shigeto Seno;Hiromi Daiyasu;Yoichi Takenaka;Hideo Matsuda2012/12～

Academic presentationMonographCo-author2012/11～

International academic conferenceTranscript-Type Dependent Normalization of Expression Levels in RNA-Seq Data for Non-Coding RNA AnalysisIn refereedCo-authorTomoshige Ohno;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaJoint Conference on Informatics is Biology, Medicine and Pharmacology2012/10～

International academic conferenceComparison of Gene Expressions measured by RNA-seq and Microarray for Transcriptome Analysis of Adipose TissuesIn refereedCo-authorMasakazu Sugiyama;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaJoint Conference on Informatics is Biology, Medicine and Pharmacology2012/10～

International academic conferenceTwo-stage method to infer gene regulatory network utilizing Link PredictionIn refereedCo-authorSho Ohsuga;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaJoint Conference on Informatics is Biology, Medicine and Pharmacology2012/10～

International academic conferenceEstimation of Dynamic Gene Regulatory Networks for Cell Differentiation by Splitting Time Course DataIn refereedCo-authorTomoyoshi Nakayama;Yoshiyuki Kido;Hiromi Daiyasu;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaJoint Conference on Informatics in Biology, Medicine and Pharmacology2012/10～

International academic conferenceBayes-based inference of gene regulatory network for multiple time series gene expression profileIn refereedCo-authorYukito Watanabe;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaJoint Conference on Informatics in Biology, Medicine and Pharmacology2012/10～

International academic conferenceAutomatic cell tracking for time-lapse fluorescent images of cell cycleIn refereedCo-authorShigeto Seno;Sakae Maeda;Tomohiro Mashita;Yoichi Takenaka;Masaru Ishii;Hideo MatsudaTowards Comprehensive Understanding of Immune Dynamism (TCUID 2012) 2012/10～

Academic presentationMonographCo-authorSho Ohsuga;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda2012/10～

Academic presentationMonographCo-authorMasakazu Sugiyama;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda2012/10～

Academic presentationMonographCo-authorTomoshige Ohno;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda2012/10～

Academic presentationMonographCo-authorYukito Watanabe;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda2012/10～

PapersIn refereedAcademic JournalCo-author2012/9～

International academic conferenceAll the 1+3n one-mismatch sequences of n-mer DNA are involved in 22.2+0.00879n strings of Perfect Linear Code words on DNAUnrefereedCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaInternational Conference on Intelligent Systems for Molecular Biology (ISMB2012)U442012/7～

Academic presentationMonographCo-authorTomoshige Ohno;Shigeto Seno;Yoichi Takenaka;Hideo Matsuda2012/6～

Academic presentationMonographCo-author2012/6～

Academic presentationSingle-Author2012/5～

PapersA method for isoform prediction from RNA-Seq data by iterative mappingIn refereedAcademic JournalCo-authorTomoshige Ohno;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaIPSJ Transactions on Bioinformatics( 5 ), pp.27-332012/4～

Academic presentationMonographCo-author2012/3～

PapersAn Estimation Method for Inference of Gene Regulatory Network Using Bayesian Network with Uniting of Partial ProblemsIn refereedAcademic JournalCo-authorYukito Watanabe;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaBMC Genomics(13 - suppl. 1)2012/1～10.1186/1471-2164-13-S1-S12

International academic conferenceAn Estimation Method for Inference of Gene Regulatory Network Using Bayesian Network with Uniting of Partial ProblemsIn refereedMonographCo-authorYukito Watanabe;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe tenth Asia Pacific Bioinformatics Conference (APBC2012)A3.12012/1～

PapersInference of S-system Models of Gene Regulatory Networks using Immune AlgorithmIn refereedAcademic JournalCo-authorTomoyoshi Nakayama;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaJournal of Bioinformatics and Computational Biology( 9 - suppl. 1)2011/12～10.1142/S0219720011005768

International academic conferenceInference of S-system Models of Gene Regulatory Networks using Immune AlgorithmIn refereedCo-authorTomoyoshi Nakayama;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 2011 International Conference on Genome Informatics (GIW2011)2011/12～

International academic conferenceA random forest approach to the detection of a rare disease in the case control studiesUnrefereedCo-authorYoshimi Kawakami;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 22nd International Conference on Genome Informatics (GIW 2011) 2011/12～

PapersIn refereedAcademic JournalCo-author2011/11～

PapersPerfect Hamming code with a hash table for faster genome mappingIn refereedAcademic JournalCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaBMC Genomics (12 - suppl. 3), S32011/11～10.1186/1471-2164-12-S3-S8

International academic conferenceMutation-aware clustering with error correction for short-read genome mappingIn refereedMonographCo-authorDaisuke Ueta;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 2011 Joint Conference of CBI&JSBiJSBi-272011/11～

International academic conferencePerfect Hamming code with a hash table for faster genome mappingIn refereedMonographCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaAsia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 20113.22011/11～

International academic conferenceNetwork analysis for time-series expression profile using nested effects modelsUnrefereedCo-authorTatsuya Kitaguchi;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 2011 Joint Conference of CBI & JSBi,JSBi-492011/11～

International academic conferenceSequence determination and expression estimation of alleles from RNA-Seq dataUnrefereedCo-authorYoichi Takenaka;Tomoshige Ohno;Kayo Okuda;Shigeto Seno;Hideo MatsudaAsia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011No.1382011/11～

International academic conferenceDetect unique gene regulatory networks along dendrogram of cell differentiationUnrefereedCo-authorRyo Araki;Tomoshige Ohno;Kayo Okuda;Shigeto Seno;Hideo MatsudaAsia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011No. 1562011/11～

International academic conferencePerfect Hamming code with Burrow-Wheeler translation for genome mappingUnrefereedCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaAsia Pacific Bioinformatics Network's 10th InCoB - 1st ISCB Asia Joint Conference 2011No. 1342011/11～

International academic conferenceA Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial ProblemsUnrefereedCo-authorYukito Watanabe;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)N132011/7～

International academic conferenceA Directed Graphical Gaussian Model for Inferring Gene Regulatory NetworksUnrefereedCo-authorTomoshige Ohno;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011),X162011/7～

International academic conferencePerfect Hamming Code as Hash key for Fast Genome MappingUnrefereedCo-authorYoichi Takenaka;Shigeto Seno;Hideo MatsudaProceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)U222011/7～

International academic conferenceFeature selection for specifying experimental conditions that activate gene transcriptionsUnrefereedCo-authorSho Ohsuga;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)M132011/7～

International academic conferenceA method for risk prediction of a serious disease using rule-based analysisUnrefereedCo-authorMasakazu Sugiyama;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB2011)N132011/7～

Academic presentationMonographCo-author2011/6～

Academic presentationMonographCo-author2011/3～

International academic conferenceAn Improved RNA-Seq Analysis Method for Isoform Prediction by Iterative MappingIn refereedMonographCo-authorTomoshige Ohno;Motokazu Ishikawa;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 2010 International Conference on Genome Informatics (GIW2010)No.82010/12～

International academic conferenceRevealing regulatory relationships of crosstalk with multiple time-series gene expression profilesUnrefereedCo-authorKiyoshi Yoshizawa;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProc. the 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)P0172010/12～

International academic conferenceA bootstrapping method of S-system model for estimating timeline gene regulatory networksUnrefereedCo-authorTomoyoshi Nakayama;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProc. the 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)P0272010/12～

International academic conferenceA Metadata Management System for Composing Bioinformatics WorkflowsIn refereedMonographCo-authorTakuya Ishibashi;Yoshiyuki Kido;Takanori Fukumoto;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 9th International Conference on Bioinformatics (InCoB2010)No.1872010/9～

International academic conferenceAn algorithm for fast exact search of chemical compounds by clustered data beforehandUnrefereedCo-authorLy Nguyen;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 21st International Workshop on Combinatorial Algorithms2010/7～

International academic conferenceA method for predicting compound-protein interactions using canonical correlational analysisUnrefereedCo-authorTakuya Hashimoto;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProc. 18th Annual International Conference on Intelligent Sysmtes for Molecular Biology,M0152010/7～

International academic conferenceA method for detecting structural variants from massive paired end genome sequences by mapping signaturesUnrefereedCo-authorDaisuke Ueta;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProc. 18th Annual International Conference on Intelligent Sysmtes for Molecular Biology,U0412010/7～

International academic conferenceAn estimation method of S-system model of gene regulatory networks using immune algorithmUnrefereedCo-authorTomoyoshi Nakayama;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProc. 18th Annual International Conference on Intelligent Sysmtes for Molecular BiologyX0602010/7～

PapersGene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancerIn refereedAcademic JournalCo-authorAtsushi Takeno;Ichiro Takemasa;Shigeto Seno;Yoichi TakenakaAnnals of Surgical Oncology ( 17 - 4 ), pp.1033-10422010/4～

PapersImproved prediction method for protein interactions using both structural and functional characteristics of proteinsIn refereedAcademic JournalCo-authorTatsuya Yoshikawa;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaIPSJ Transactions on Bioinformatics ( 3 ), pp.10-232010/3～

Academic presentationMonographCo-author2010/3～

International academic conferenceA Method for Efficient Execution of Bioinformatics WorkflowsIn refereedMonographCo-authorJunya Seo;Yoshiyuki Kido;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaGenome Informatics (GIW2009)vol.23, pp.139-1482009/12～

International academic conferenceA Method of Estimation of Crosstalk Genes with Multiple Time-Series Gene Expression ProfilesUnrefereedCo-authorKiyoshi Yoshizawa;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 20th International Conference on Genome Informatics (GIW2009)P0572009/12～

International academic conferenceA Method for Extraction of the Active Compound Groups which Have Strong Relationship between Structure and ActivityUnrefereedCo-authorTakahiro Kishimoto;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 20th International Conference on Genome Informatics (GIW2009)P1332009/12～

International academic conferenceA Method for Inference of Gene Regulatory Networks based on Bayesian Network with Clustering of Time-Series SubsequencesUnrefereedCo-authorYuya Shuto;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB2009)X672009/6～

International academic conferenceA Method for Analyzing Gene Expression Profiles based on the Underlying StructuresUnrefereedCo-authorShigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB2009)M212009/6～

PapersThe transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell lineIn refereedAcademic JournalCo-authorFANTOM Consortium;Harukazu Suzuki;Yoichi TakenakaNature Genetics ( 41- 5 ), pp.553-5622009/4～

Academic presentationMonographCo-author2009/3～

International academic conferenceA Method for Making a New Reference Set of PDB Entries for Retrieving Protein 3D Structures with Structural AnnotationsIn refereedMonographCo-authorMasahiko Hamada;Yoshiyuki Kido;Shigeto Seno;Hiromi Daiyasu;Yoichi Takenaka;Hideo MatsudaProceedings of the 2008 Annual Conference of the Japanese Society for BioinformaticsP074/T022008/12～

International academic conferenceA Method for Reducing Bounds of Compound Search by Dividing Structure KeyIn refereedMonographCo-authorTakashi Shimizu;Yoshiyuki Kido;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 2008 Annual Conference of the Japanese Society for BioinformaticsP077/T012008/12～

International academic conferenceArchitecture of an Efficient Data Transfer System and Manager for Genome-wide Analysis WorkflowsUnrefereedCo-authorJunya Seo;Yoshiyuki Kido;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaThe 3rd MEI International Symposium2008/12～

International academic conferenceA Method for Analysis of Tissue-Specific Transcriptional Control Using Distributions of Transcription Starting SitesUnrefereedCo-authorMitsuru Jikeya;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 2008 Annual Conference of the Japanese Society for BioinformaticsP0442008/12～

International academic conferenceThe Validity Evaluation of Gene Regulatory Network Motifs Based on Differential Equation ModelUnrefereedCo-authorReiji Ohsugi;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 2008 Annual Conference of the Japanese Society for BioinformaticsP0452008/12～

International academic conferenceAn Efficient Data Transfer on Workflows for Genome-wide AnalysisUnrefereedCo-authorJunya Seo;Yoshiyuki Kido;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 2008 Annual Conference of the Japanese Society for BioinformaticsP0752008/12～

Academic presentationMonographCo-author2008/12～

Academic presentationMonographCo-author2008/9～

International academic conferenceTissue specificity measured by differences in information content between target tissue and whole tissueUnrefereedCo-authorYoichi Takenaka;Hideo MatsudaProceedings of International Society for Computational Bilogy 2008A212008/7～

International academic conferenceA Clustering Method for Expression Patterns of Transcription Starting SitesUnrefereedCo-authorMitsuru Jikeya;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of International Society for Computational Bilogy 2008J292008/7～

International academic conferenceA Data Transmission Method for Web Services in Bioinformatics WorkflowsUnrefereedCo-authorJunya Seo;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of International Society for Computational Biology 2008E362008/7～

International academic conferenceA method for analysis of tissue-specific alternative transcripts using CAGE tagsUnrefereedCo-authorShigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of International Society for Computational Bilogy 2008J302008/7～

Academic presentationCo-author2008/5～

PapersA Distributed-Processing System for Accelerating Biological Research using Data-StagingIn refereedAcademic JournalCo-authorYoshiyuki Kido;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaIPSJ Transactions on Bioinformatics( 49 ), pp.58-642008/3～

PapersA Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity PredictionIn refereedAcademic JournalCo-authorGen Kawamura;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaIPSJ Transactions on Bioinformatics( 49 ), pp.46-572008/3～

Academic presentationMonographCo-author2008/3～

International academic conferenceGO based Tissue Specific Functions of Mouse using Countable Gene Expression ProfilesIn refereedAcademic JournalCo-authorYoichi Takenaka;Atsuko Matsumoto;Hideo MatsudaGenome InformaticsVol 19, pp.154-1652007/12～

International academic conferenceA Method for Retrieving Functionally Similar Bioinformatics WorkflowsUnrefereedCo-authorJunya Seo;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of 2007 Annual Conference of Japanese Society for BioinformaticsP0112007/12～

Academic presentationMonographCo-author2007/12～

PapersTissue-Specific Functions based on Information Content of Gene Ontology using Cap Analysis Gene ExpressionIn refereedAcademic JournalCo-authorSami Maekawa;Atsuko Matsumoto;Yoichi Takenaka;Hideo MatsudaMedical and Biological Engineering and Computing( 45 ), pp.1029-10362007/10～

Academic presentationMonographCo-author2007/9～

PapersRetrieving Functionally Similar Bioinformatics Workflows using TF-IDF FilteringIn refereedAcademic JournalCo-authorJunya Seo;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaIPSJ Transactions on Bioinformatics( 48 ), pp.20-292007/3～

Academic presentationMonographCo-author2007/3～

Academic presentationMonographCo-author2006/12～

Academic presentationMonographCo-author2006/11～

PapersIn refereedAcademic JournalCo-author2006/10～

International academic conferenceInference of Transcriptional Regulatory Networks using CAGE Transcriptome Dataset of Mus musculusIn refereedCo-authorKohei Taki;Yoichi Takenaka;Hideo MatsudaProceedings of World Congress on Medical Physics and Biomedical Engineering2006/8～

International academic conferenceA Method for Exploring Tissue-Specific Functions based on Information Content of Gene Ontology Terms using CAGE TagsIn refereedCo-authorSami Maekawa;Atsuko Matsumoto;Yoichi Takenaka;Hideo MatsudaProceedings of World Congress on Medical Physics and Biomedical Engineering2006/8～

International academic conferenceExtraction of Functionally Similar Bioinformatics WorkflowsIn refereedCo-authorJunya Seo;Shigeto Senoo;Yoichi Takenaka;Hideo MatsudaProceedings of Workshop on Distibuted Applications, Web Services,Tools and GRID Infrastructures for Bioinformatics (NETTAB 2006)2006/7～

Academic presentationMonographCo-authorYoichi Takenaka;Masato Sakata;Hideo Matsuda2006/6～

PapersA method for similarity search of genomic positional expression using CAGEIn refereedAcademic JournalCo-authorShigeto Seno;Yoichi Takenaka;Chikatoshi Kai;Jun Kawai;Piero Carninci;Yoshihide HayashizakiPLoS Genetics ( 2 - 4 ), pp. 578-5862006/4～

PapersTranscript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAsIn refereedAcademic JournalCo-authorMaeda N, ;Kasukawa T, ;Oyama R, ;Gough J,;Frith M, ;Yoichi. TakenakaPLoS Genetics( 2 - 4 ), pp.498-5032006/4～

Academic presentationMonographCo-author2006/3～

Academic presentationMonographCo-author2005/12～

PapersThe transcriptional landscape of the mammalian genomeIn refereedAcademic JournalCo-authorCarninci P,;Kasukawa T,;Katayama S, ;Gough J,;Yoichi. TakenakaScience ( 309 - 5740 ), pp.1559-15632005/9～

International academic conferenceA Framework for Biological Analysis on the GridIn refereedCo-authorToshiyuki Okumura;Susumu Date;Yoichi Takenaka;Hideo MatsudaProceedings of Lifescience Grid Workshop 2005/5～

Academic presentationMonographCo-author2005/4～

International academic conferenceA Method for Clustering Expression Data Based on Graph StructureIn refereedAcademic JournalCo-authorShigeto Seno;Reiji Teramoto;Yoichi Takenaka;Hideo MatsudaGenome InformaticsVol.15, No.2, pp.151-1602004/12～

Academic presentationMonographCo-author2004/12～

Papers遺伝子の機能分類を利用した遺伝子制御ネットワーク推定手法In refereedAcademic JournalCo-author2004/9～

Academic presentationMonographCo-author2004/9～

International academic conferenceInference of gene regulatory network based on module network model with gene functional classificationsIn refereedMonographCo-authorKohei Taki;Reiji Teramoto;Yoichi Takenaka;Hideo MatsudaProc. 3rd IEEE Computer Society Bioinformatics Conference(CSB2004)pp.632-6332004/8～

International academic conferenceA Graph Analysis Method to Detect Metabolic Sub-networks Based on Phylogenetic ProfileIn refereedMonographCo-authorShoko Miyake;Yoichi Takenaka;Hideo MatsudaProc. 3rd IEEE Computer Society Bioinformatics Conference(CSB2004)pp.634-6352004/8～

PapersGraph-based clustering for finding distant relationships in a large set of protein sequencesIn refereedAcademic JournalCo-authorHideya Kawaji;Yoichi Takenaka;Hideo Matsuda;Akihiro HashimotoBioinformatics ( 20- 2 ), pp.243-2522004/1～

International academic conferenceMapping of Artificial Nucleosome Positioning Sequences to the Saccharomyces cerevisiae GenomeUnrefereedCo-authorVorathaya Tantoolvesm;Yoichi Takenaka;Satoshi Harashima,;Hideo MatsudaGenome InformaticsNo.14, pp.462-4632003/12～

Academic presentationMonographCo-author2003/12～

International academic conferenceA network analysis method by comparing microbial metabolic pathwaysUnrefereedCo-authorShoko Miyake;Yukako Tohsato,;Yoichi Takenaka;Hideo MatsudaEscherichia coli Conference Towards New Biology in the 21st Century2003/10～

Academic presentationMonographCo-author2003/9～

International academic conferenceP-Quasi Complete Linkage Clustering Method for Gene-Expression Profiles based on Distribution AnalysisUnrefereedCo-authorShigeto Seno;Reiji Teramoto;Yoichi Takenaka;Hideo Matsuda11th International Conference on Intelligent Systems for Molecular BiologyB-592003/7～

International academic conferenceFrequency enumeration of DNA subsequences from large-scale sequences using linear codUnrefereedCo-authorYoichi Takenaka;Hideo Matsuda11th International Conference on Intelligent Systems for Molecular BiologyI-192003/7～

PapersAnalysis of gene expression profiles based on clusteringIn refereedAcademic JournalCo-authorYoichi Takenaka;Hideo MatsudaGenome Research( 13 - 6b ), p.15582003/6～

International academic conferenceA clustering method for comparative analysis between Genomes and PathwaysIn refereedMonographCo-authorShoko Miyake;Yukako Tohsato;Yoichi Takenaka;Hideo Matsuda8th International Conference on Database Systems for Advanced Applications (DASFAA 2003)pp. 327-3342003/3～

PapersShortening the Computational time of the fluorescent DNA computingIn refereedAcademic JournalCo-authorTakenaka Yoichi;Hashimoto AkihiroLecture Note in Computer Science ( 2568 ), pp.85-942003/1～

PapersAnalysis of the mouse transcriptome based upon functional annotation of 60,770 full length cDNAsIn refereedAcademic JournalCo-authorYoichi TakenakaNature( 420 ) pp. 563-732002/12～

Academic presentationMonographCo-author2002/12～

PapersA proposal of DNA computing on beads with application to SAT problemsIn refereedAcademic JournalCo-authorTakenaka Yoichi;Hashimoto AkihiroLecture Note in Computer Science( 2340 ), pp.182-1902002/9～

International academic conferenceShortening the computational time of the fluorescent DNA computingIn refereedMonographCo-authorTakenaka Yoichi;Hashimoto AkihiroEighth International Meeting on DNA computers (DNA8)pp. 51-602002/6～

International academic conferenceAn analog algorithm for satisfiability problemIn refereedMonographCo-authorYoichi Takenaka;Akihiro HashimotoFifth International Symposium on Theory and Applications of Satisfiability Testing (SAT2002)pp. 70-772002/5～

International academic conferenceDNA computing by competitive hybridization for maximum satisfiability problemIn refereedMonographCo-authorYoichi Takenaka;Akihiro HashimotoThe 2002 IEEE world congress on computational intelligence, Congress on Evolutionary　Computation (CEC2002)pp. 472-4762002/5～

International academic conferenceAnalysis of gene expression profiles based on clusteringUnrefereedCo-authorYoichi Takenaka;Hideo MatsudaFunctional annotation of mouse 2 (FANTOM2) Cherry Blossom meeting2002/4～

Academic presentationMonographCo-author2001/12～

PapersRelaxation of coefficient sensitiveness to performance for neural networks using neuron filter through total coloring problemsIn refereedAcademic JournalCo-authorTakenaka Yoichi;Funabiki Nobuo;Higashino TeruoIEICE Transactions of Fundamentals ( E84-A・No.9 ), pp.2367-23702001/9～

International academic conferenceA proposal of DNA computing on beads and its application to SAT problemsIn refereedMonographCo-authorTakenaka Yoichi;Hashimoto AkihiroSeventh International Meeting on DNA computers (DNA7)pp. 331-3392001/6～

Academic presentationMonographCo-author2001/3～

Academic presentationMonographCo-author2000/12～

PapersA proposal of neuron filter: a constraint resolution scheme of neural networks for combinatorial optimization problemsIn refereedAcademic JournalCo-authorTakenaka Yoichi;Funabiki Nobuo;Higashino TeruoIEICE Transactions of Fundamentals (E83-A・9 ), pp.1815-18232000/9～

International academic conferenceA proposal of neuron filter algorithm with a thinning-out method for total coloring problemsIn refereedMonographCo-authorYoichi Takenaka;Nobuo FunabikiProc. 4th world multi conference of Systemics, Cybernetics and Informatics (SCI2000)pp. 563-5682000/7～

International academic conferenceA non-feedback neuron filter algorithm for separated board-level routing problems in FPGA-based logic emulation systemsIn refereedMonographCo-authorTAKENAKA Yoichi;FUNABIKI NobuoProceedings of IEEE International Joint Conference on Neural Networks (IJCNN'99)Jcnn0550.pdf1999/7～

International academic conferenceA gradual neural network approach for broadcast scheduling in packet radio networksIn refereedMonographCo-authorFUNABIKI Nobuo;TAKENAKA YoichiProceedings of IEEE International Joint Conference on Neural Networks (IJCNN'99)Jcnn0551.pdf1999/7～

PapersIn refereedAcademic JournalCo-author1999/5～

Academic presentationAcademic JournalCo-authorTAKENAKA Yoichi;FUNABIKI Nobuo1998/12～

International academic conferenceAn improved genetic algorithm using the Convex Hull for traveling salesman problemIn refereedMonographCo-authorTAKENAKA Yoichi;FUNABIKI NobuoProceedings of IEEE International Conference on Systems, Man, and Cybernetics (SMC'98) pp. 2279-22841998/10～

Academic presentationAcademic JournalCo-author1998/3～

Academic presentationAcademic JournalCo-author1998/1～

PapersIn refereedAcademic JournalCo-author1997/11～

PapersA maximum neural network approach for N-Queen problems. In refereedAcademic JournalCo-authorFunabiki Nobuo;Takenaka Yoichi;Nishikawa SeishiBiological Cybernetics(76), pp. 251-2551997/6～

International academic conferenceA proposal of neuron mask in neural network algorithm for combinatorial optimization problemsIn refereedMonographCo-authorTAKENAKA Yoichi;FUNABIKI Nobuo;NISHIKAWA SeishiProceedings of IEEE International Conference on Neural Networks (ICNN'97)Vol.2, pp. 1289-12941997/6～

Academic presentationAcademic JournalCo-author1997/3～

Academic presentationAcademic JournalCo-author1996/11～

PapersIn refereedAcademic JournalCo-author1996/10～

Academic presentationAcademic JournalCo-author1996/1～

International academic conferenceA Method for the Inference of Gene Regulatory Networks based on Dynamic Bayesian Network with Clustering of Time-Series SubsequencesUnrefereedCo-authorYuya Shuto;Shigeto Seno;Yoichi Takenaka;Hideo MatsudaProceedings of the 20th International Conference on Genome Informatics (GIW2009)P080

TAKENAKA, Yoichi